ontolopy.obo.load_obo

ontolopy.obo.load_obo(file_loc, ont_ids=None, discard_obsolete=True)

Loads ontology from .obo file at file_loc.

Parameters
  • file_loc – file location - path to stored obo file.

  • ont_ids – list of ontology ids, e.g. [‘UBERON’, ‘CL’]

  • discard_obsolete – if True discard obsolete terms.

Returns

Obo ontology object.