Before you start
Before you start¶
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You’re looking at Natalie Zelenka’s thesis Phenotype and Function from Genotype: Combining Data Sources to Create Explanatory Predictions.
This thesis is a jupyter book[1], meaning that is made up of markdown files and jupyter notebooks: the idea behind this was to make this thesis as reproducible as possible.
These files are available on GitHub.
For some figures and tables (mostly in the Tissue-specific Expression part), this also means that the the graphs and figures are the output from that code, generated when the book is built.
When viewed online, the code to create these graphs can be viewed alongside them if desired with a drop down + button.
The best way to look at this thesis
You will always be able to find the most up-to-date version of this book at this link. This thesis is best viewed as a web page since it contains interactive features such as interactive figures and scrollable tables, as well as drop-down boxes containing the code used to create some figures and tables.
Alternatively, you can download the most up to date PDF of this thesis here.
How to navigate online
If you are viewing this book online, you can use the sidebar on the left to navigate to a chapter or section, and within those sections, you can navigate to specific subsections using the right navbar.